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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015872084.1_cds_XP_016434661.1_30695
CDS Infomation

[gene=LOC107761023] [db_xref=GeneID:107761023] [protein=probable polygalacturonase At3g15720] [protein_id=XP_016434661.1] [location=join(37406..37555,44836..45222,47233..47352,47481..47591,48030..48194,48411..48437,48879..49089,49209..49290,49433..49541,49616..49732,49828..50061)] [gbkey=CDS]
Sequence

ATGCGAGGGAGCTGTCGCGTTCACGAAGAAGGAATGTCTGGAAAGAGAGTTTTAGTTCTG
AATATGGGACTTCGTCCCATTTTCCATTTTTCCCGATTTGGAGCTCAGGGAGAGGCAATG
TTCGGGAGATTTTTCAAGGAAAATATCGGGGTGTCGCAATTGCGAGCTCTTTTTCGCAAT
TACAAACATCACAAATGCAAAACAAAGGTCGCAAATTCAAACCTTATATCAGAAGCTCAA
ATGTCGCAAATGCGACAAAATATTAGCAAATGTGAACTGCCCACCTTCGCAAAAGCGGCC
AACTTCTTCGCAATTGCGAAGATACCCCAATTTAGCATTGCATTGCAATTGCGATGCCAG
AGTTGCAAATGCGGATACAGCATCCATCACAAATGTGACCCCTTCGTCGAAAATGCGAAG
TCCCAGCCCCCAACCCATGCTCGCGAATGCCAACTATTGTTTGCAAAAGCAAGGCTCGCA
AATGCGAGCCAGACCTCGCAAATGCGAAATCTGCAGACAAACACTAGAAATAGCAGTGAC
AGAGTTTCCAACTTTCTAGTTTTTGTTACTTCATTTATTCTTCACCAAGGTCTAGCTGCT
ATTTTTGATGTCACAACTTATGGTGCTATCGGAGATGGAGTAACTGATGATTCTCAAGCT
TTTCAACAAGCTTGGCTAGATGTATGCTATGATTGTGAAAATCCAACATTCTTGTTGAGC
CCTATATTATTTCAAGGCCCTTGCAATTCTACCACTATTAATATACAGGTTTTAGGGAAT
ATCACGGCACCCCAAAATTTAAGAGAATGGGTAGGGTGTGAAAATGATAGTTGGCTTTAT
TTCACTGGGATATCTGGTCTCATCATCAATGGCACTGGTCAAATTAATGGTCAAGGCGCT
GCCTGGTGGAACATTTCTGGTCCCGCTCAAAAGGTCAATGGGACTTGCCACAAGCCAACG
ACTATGCACTTTAATTTTTGTAATGATCTTGAATTGAGTGGACTGAACCTTGTTAATAGT
TCAAGAAACCATATAAGCATTACTTTTAGCACAGGGGTAAATATCTCCAATATCACTAAA
ACTGCACCTGAAGATAGCCCCAACACTGATGGTATTGATCTCTCTATGTCTACCACTCAA
GTTCAAATTCTGAATTCCACTTTTCAAACAGGTGATGATTGCATTTCCATCAATACGGGA
TGTTCTGATATAAATATTACTGGTATTTCATGTGGACCAGGACATGGTATAAGTGTAGGA
AGCCTAGGAATTAATGAGACTTTTGCTGCTGTGGAGAATATAAATGTAACAAATTGTACC
TTCCAAGGAACACAAAATGGTGTAAGAATCAAAACATGGCAGGGTGGTATGGGCTATGCC
AGATTTATAAATTTTGAGAATATCAACCTCACAAATGTTCGTAATCCCATCATTATCGAC
CAATTCTATTGCAATGGTGCTCATAATTGTGGAATTGAGCCAAATGCAGTCCAAGTGAGT
AATGTAACATACAAGGATATATTTGGGACAACACCAAGCAAAATAGCTATAAATCTGAAT
TGCAGTGACAACTGCACAGCTTGCACCAACTTAGTATTTGAGCAAATTAATATAACCTCA
GTTTTGCCTGAAAAACAAACTCTTGTATCTTGTAATAATGCTCATGGACAAGCCAATTCA
ACTTTACCCCCAATAACATGCTTGTTAACATAA

Peptide Sequence

PEP ID

XP_016434661.1
PEP Infomation

PREDICTED: probable polygalacturonase At3g15720 [Nicotiana tabacum]
Sequence

MRGSCRVHEEGMSGKRVLVLNMGLRPIFHFSRFGAQGEAMFGRFFKENIGVSQLRALFRN
YKHHKCKTKVANSNLISEAQMSQMRQNISKCELPTFAKAANFFAIAKIPQFSIALQLRCQ
SCKCGYSIHHKCDPFVENAKSQPPTHARECQLLFAKARLANASQTSQMRNLQTNTRNSSD
RVSNFLVFVTSFILHQGLAAIFDVTTYGAIGDGVTDDSQAFQQAWLDVCYDCENPTFLLS
PILFQGPCNSTTINIQVLGNITAPQNLREWVGCENDSWLYFTGISGLIINGTGQINGQGA
AWWNISGPAQKVNGTCHKPTTMHFNFCNDLELSGLNLVNSSRNHISITFSTGVNISNITK
TAPEDSPNTDGIDLSMSTTQVQILNSTFQTGDDCISINTGCSDINITGISCGPGHGISVG
SLGINETFAAVENINVTNCTFQGTQNGVRIKTWQGGMGYARFINFENINLTNVRNPIIID
QFYCNGAHNCGIEPNAVQVSNVTYKDIFGTTPSKIAINLNCSDNCTACTNLVFEQINITS
VLPEKQTLVSCNNAHGQANSTLPPITCLLT

Transcript Sequence

Gene sequence data has not been registered.